Why did Remastersys mess up my folder structure?

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http://askubuntu.com – I made a distro of Ubuntu from Remastersys. Everything works except, the places are messed up. The home folder acts as the desktop folder, and I can't see my pictures, my videos ect folders inside home.. I coppeid my entire Home foldr to /ect/skel/ before creating the distro.. Any advice please?? (HowTos)