[ubuntu] Rhythmbox screws up music on iPod

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http://ubuntuforums.org – When I sync my music using my windows 7 partition and itunes, my music plays fine. When I sync it using Ubuntu 12.04 and Rhythmbox, songs tend to skip, get cut short a few minutes, or just disappear from my iPod completely. I would rather not have to restart my computer into a different OS just to sync my iPod. Is there any way to fix this? (Hardware)