Ubuntu 12.04 LTS Not booting to the logon screen consistently - 2 HDD's

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http://askubuntu.com – I am a novice on Ubuntu and till date my knowledge on Ubuntu is very limited except for few basic commands Let me provide a quick brief about the system setup Motherboard : Asus M4A88TD - M EVO (with the USB3.0 Addon card) with 8GB RAM (hence only 64bit version) Integrated GPU _ ATI Radeon HD 4200 SDA - Hitachi 250 GB HDD - SATA - Holds the windows 7 ultimate OS SDB - Samsung 40GB HDD - IDE - Holds Ubuntu 12.04 LT CDROM - Samsung DVDRW - IDE Installed 12.04 using ISO image booting through a cs, used the partition manager to create /,/usr,/home,swap space in the second HDD Procedure wh (HowTos)