two scripts, 1 header... help

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http://www.unix.com – Hi, I run a site that essentially uses 2 scripts, 1) mediawiki 2) phpfox What I need to do is make both have the same header. I can do this for a bit in HTML, but some elements are difficult and wont work on the mediawiki part. For example the inbox will not show new messages on mediawiki, only on phpfox. How can I make 1 header for both sites using the phpfox header as the base and functional? (HowTos)