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Remote commands execution and file acces in Linux and Windows

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http://stackoverflow.com – Suppose I have a server application installed in a few Linux and Windows machines. Now I would like to control it remotely. That is, I would like to start and stop the application, update the application configuration files, reads the logs remotely. It looks to be easy in the Linux worlds. I can use ssh, scp, and probably nfs to execute commands in remote Linux machines and access their files. The problem is that I would like to execute commands and access files in remote Linux and Windows machines uniformly from a Windows machine. I need also some scripting capabilities too. What is the be (HowTos)