Problems with root

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http://androidforums.com – I rooted my daughter's EVO 3d with Hboot version 1.3. I don't remember exactly method I used, but I think that it was revolutionary. I got superuser on the phone and s-off when the process was complete, but root apps won't work, and root checker says that I don't have proper root access. The phone works fine just no root. What am I missing? (General)