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Mouse issue RAT3?

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http://crunchbanglinux.org – I am running into a slight mouse issue on #! When I bring up something that involved something other then the window I am in Like say the "Set Wallpaper" function it will allow me to click buttons in the main window but as soon as I bring up a second window like for the preferences section it's keyboard only from there. The same issue happens in chrome and on the tint2 bar I cant click on anything. This so far is the only issue I'm having on my new install.I have installed the Nvidia drivers and so on but its not helping to much (That I can see) (HowTos)