Jelly Beans SD card swap issue

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http://forum.xda-developers.com – I flashed Beans build 11 with pbj kernel. In that I picked the option to swap internal and external sd cards. Now I cant change wallpapers and some of my apps are telling me "sd card required for this application" I would prefer to just fix this rather than re-flashing the rom again without the sd card swap. I have been searching the forums for hours and can normally find a way to resolve any issue, but not this time. Any help would be great. Thanks (HowTos)