Java application on Linux [on hold]

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http://stackoverflow.com – I'm new to LINUX and java programming. I've a Server and Client application. Sever is developed using C# programming runs on a windows machine. Currently I've developed client application in java which runs on Linux machine. But Now I need client side application to start on the boot up of the LINUX OS. I don't want to use any LINUX existing OS like Ubuntu or any other and I need to compile my Linux Kernel and run this client side Java application. If possible where do I get started ??? (HowTos)