howto structure a version control repository of sys admin scripts

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http://serverfault.com – I think by now all sys admins have started to amass a large collection of scripts for kinds of scenarios, user management, server builds, incident mitigation tasks, app deployment. and like most sys admins I've got these scripts kept in a bunch of version control repositories. These repositories have started to become unstructured and hard to find content; leading to duplication and other such fun things. does anyone have an equivalent of: http://stackoverflow.com/questions/16829/structure-of-projects-in-versio... but for structure administration scripts instead of development projec (HowTos)