Enabling ssl with only one domain pointing to site

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http://www.linuxquestions.org – My test server is going well for the past 2 months. I have learned a lot from searching the net for how to's and forums on questions I have. My next task on the to-do list is enabling ssl on my mail server. I have the ssl setup with an automatic redirect from http to https. It is working fine with a minor issue. I have 2 domains and several subdomains on the server. Since I have enabled ssl, it seems for any of the domain/subdomain links I type in with a https://, it takes me to my mail server site. How can I have it set to only one secure link to my mail server? If you need to see a file c (HowTos)