Charging issues after I restored CleanRom back up.

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http://androidforums.com – Hello, I have this replacement E3D for about a month and since it came with Hboot ver 1.40 I rooted and installed clean Room 3.0 and had no issues with it. But on Monday I did a backup and installed the alpha version of MIUI to test out ICS on the E3D. I used the room for 2 todays and since I was missing sense and the battery life of clean Rom I switched back to it Wednesday, but after that day I noticed something odd. If I put the phone to charge at with about 2/3 of juice left the phone charges fine. But if I let the phone drop to low battery and I try to charge it, the battery will stay (General)